You can select items in the Edit window and mark or unmark them to selectively choose what commands you want to execute in your measurement routine.
This step marks all of the features:
Use the Edit | Markings | Mark All menu option to mark all of the features in the measurement routine. For additional information, see "Marking Commands for Execution" in the "Editing a Measurement Routine" chapter in the PC-DMIS Core documentation.
When PC-DMIS asks if it's okay to mark manual alignment features, click Yes.
Go to the next step: "Test for Collisions"